In this directory, you will find:

- CRP_grp_members.txt: a simple listing of group IDs and sequence members

For each group, the following files are provided:

- CRP####.lst:       a simple list of the members of the group and their
                       HMM e-values
- CRP####.fas:       a fasta file with protein translations for each sequence
- CRP####.trim.msf:  a trimmed alignment of the mature peptides in each group
- CRP####.trim.hmm:  Hidden Markov Model for the alignment
- CRP####.stats:     a summary of the taxa and tissue distributions for
                     sequences in the group

You may scan your own fasta file of sequences against these motifs
in the following manner:

1. download and install HMMer from 
   ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/

2. run hmmer, e.g.,
   % hmmpfam CRP####.trim.hmm your_translated_fasta_file.fas > output.hmmpf
